A novel method is presented for time dependent quantum-mechanical simulations of systems having many degrees of freedom. The method uses classical Molecular Dynamics as a first step, from which separable effective single-mode potentials are computed for each degree of freedom. Single-mode wavepackets ("nuclear orbitals") are calculated from the effective potential, and the full multidimensional wavefunction is then constructed from the time-dependent orbitals. In the present applications the method is not exact, but an approximation of good accuracy for large realistic systems. The method was applied to study the dynamics following S->P excitation of Ba atoms in B(Ar)n clusters. The P states are nearly degenerate in this system, and we compute timescales of electronic relaxation, the electronic orbital reorientation (depolarization), and other aspects of the coupled electronic-nuclear dynamics. Results are obtained for clusters up to n=20, including all degrees of freedom in in 3D geometry. Nonadiabatic electronic transitions in the P-state manifold are found to become significant around t=1 ps. For the larger clusters (n=20) electronic relaxation is far more efficient than evaporation of Ba atoms from the cluster. For the smaller clusters (n=10) the opposite is true. The semiclassical surface hopping method of Tully is tested against our quantum calculations: This method is found to be semiquantitatively very satisfactory, but electronic state populations are off by a factor of ~2 for t=1.5 ps. The semiclassical method yields good results for the evolution in time of the structures of the cluster, but is significantly in error for time-dependent spectroscopic properties.